Genomes

• Homo sapiens (GRCh38/hg38) - Human
• Homo sapiens (hg19) - Human
• Mus musculus (mm10) - Mouse
• Bos taurus (bosTau7) - Cow
• Canis familiaris (canFam3) - Dog
• Rattus norvegicus (rn5) - Rat
• Sus scrofa (susScr11) - Pig
• Danio rerio (danRer7) - Zebrafish
• Macaca mulatta (rheMac3) - Monkey
• Xenopus tropicalis (JGI 4.2/xenTro3) - Western clawed frog
• Xenopus tropicalis (JGI 7.1) - Western clawed frog
• Xenopus laevis (JGI 7.1) - African clawed frog N/A
• Cricetulus griseus (v1.0) - Chinese Hamster
• Xenopus tropicalis (JGI 8.0) - Western clawed frog N/A
• Xenopus tropicalis (JGI 9.0) - Western clawed frog N/A
• Xenopus laevis (JGI 9.1) - African clawed frog N/A
• Macaca fascicularis (5.0) - Crab-eating macaque
• Danio rerio (GRCz10) - Zebrafish N/A
• Rattus norvegicus (Rnor 6.0) - Rat
• Equus caballus (EquCab2) - Horse N/A
• Oryctolagus cuniculus (OryCun2) - Rabbit
• Mesocricetus auratus (MesAur1.0) - Golden hamster
• Felis catus (6.2) - Cat N/A
• Mochrtus ochrogaster (AHZW01) - Prairie vole N/A
• Bos taurus (bosTau8) - Cow
• Callithrix jacchus (calJac3) - Marmoset N/A
• Pimephales promelas (SOAPdenovo v. 2) - Fathead minnow
• Ovis aries (Oar_v3.1) - Sheep
• Chlorocebus sabaeus (AQIB01) - Green monkey N/A
• Gallus gallus (Galgal4) - Chicken
• Oreochromis niloticus (GCF_001858045.2) - Nile tilapia
• Capra hircus (ARS1) - Goat
• Peromyscus maniculatus (Pman_1.0) - North American deer mouse N/A
• Macaca mulatta (Mmul_8.0.1) - Monkey N/A
• Cricetulus griseus (CriGri_1.0) - Chinese hamster
• Cavia porcellus (Cavpor3.0) - Guinea pig
• Danio rerio (GRCz11) - Zebrafish
• Mus musculus (mm9) - Mouse N/A
• Anas platyrhynchos (BGI_duck_1.0) - Duck N/A
• Gallus gallus (Gallus_gallus-5.0) - Chicken N/A
• Salmo salar (ICSASG_v2) - Atlantic salmon N/A
• Cyprinus carpio (common carp genome) N/A
• Oncorhynchus tshawytscha (Otsh_v1.0) - Chinook salmon
• Human Mitochondria genome (NC_012920.1)
• BalbC/J mouse Mitochondria genome (AJ512208.1)
• Bos taurus (ARS UCD1.2)
• Paralichthys olivaceus (Flounder_ref_guided_V1.0)
• Myotis lucifugus (Myoluc2.0)
• Rousettus aegyptiacus (Raegyp2.0) N/A
• Tree shrew (TS_20 long-read)
• Ambystoma mexicanum (ASM291563v2) - Axolotl N/A
• Gallus gallus (GRCg6a) - Chicken
• Ictalurus punctatus (GCA_001660625.3) - Channel catfish N/A
• Mustela putorius furo (MusPutFur1.0) - Ferret
• Erinaceus europaeus (GCF_000296755.1) N/A
• Macaca mulatta (Mmul_10)
• Macaca fascicularis (Macaca_fascicularis_5.0) N/A
• Pagrus major (Pmaj_1.0) N/A
• Petromyzon marinus
• Homo sapiens (CHM13 T2T v1.1) - Human N/A
• Ovis aries (ARS-UI_Ramb_v2.0) - Sheep
• Equus caballus (EquCab3.0) - Horse
• Epinephelus coioides - Orange-spotted grouper N/A
• Anabas testudineus (fAnaTes1.2) - Climbing perch
• Bubalus bubalis (NDDB_SH_1) N/A
• Sus scrofa (Large white v1 from Ensembl) - Pig
• Homo sapiens (T2T_CHM13v2) - Human N/A
• Salmo salar (USDA_NASsal_1.1) - Atlantic salmon
• Vulpes lagopus (ASM1834538v1) - Arctic fox N/A
• Takifugu rubripes (fTakRub1.3 from ENA)
• Macaca nemestrina (Mnem_1.0)
• Eptesicus fuscus (EptFus1.0) - Big brown bat N/A
• Pteropus alecto (ASM32557v1) - Black flying fox
• Oncorhynchus mykiss (USDA_OmykA_1.1) - Rainbow trout
• Macaca fascicularis (6.0) - Crab-eating macaque
• Dicentrarchus labrax - European seabass
• Equus asinus (ASM1607732v2) - Ass
• Nothobranchius furzeri - Turquoise killifish N/A
• Elephas maximus indicus - Indian elephant N/A
• Labeo rohita (GCF_022985175.1) - Rohu N/A
• Anolis sagrei - Brown anole N/A
• Eublepharis macularius - Leopard gecko N/A
• Callithrix jacchus (calJac4) - Marmoset N/A
• Epinephelus lanceolatus - Giant grouper
• Rattus norvegicus (Norway rat) - GCF_015227675.2 N/A
• Ambystoma mexicanum (AmexG_v6) - Axolotl N/A
• Odontesthes bonariensis - Pejerrey (fOdoBon6.hap1) N/A
• Salmo salar (Ssal_v3.1) - Atlantic salmon
• Camelus dromedarius (Arabian camel) - GCA_000803125.3 N/A
• Falco rusticolus (gyrfalcon) - GCA_015220075.1 N/A
• Sturnira hondurensis (GCA_014824575.2) - Honduran yellow-shouldered bat N/A
• Bos taurus breed Jersey (GCA_021234555.1) - Cattle N/A
• Bos taurus Brown Swiss Cow (GCA_914753205.1) - Cattle N/A
• Larimichthys polyactis (GCA_018985215.1) - Small yellow croaker N/A
• Monodelphis domestica (GCA_000002295.1) - Gray short-tailed opossum N/A
• Micropterus salmoides (GCF_014851395.1) - Largemouth bass N/A
• Carassius gibelio strain clone F (GCA_019843895.2) - Silver crucian carp N/A
• Scophthalmus maximus (ASM1334776v1) - Turbot N/A
• Bos taurus ARS UCD2.0 (GCF_002263795.3) - Cow N/A
• Columba livia (GCF_036013475.1) - Rock pigeon N/A
• Acomys cahirinus - African spiny mouse (zenodo.org) N/A
• Mus musculus (mm39) - Mouse N/A
• Solea senegalensis - Senegalese sole (GCA_919967415.2) N/A
• Etroplus suratensis (GCA_041004005.1) - Green chromide N/A
• Ctenopharyngodon idella (GCF_019924925.1) - Grass carp N/A
• Siniperca chuatsi (GCF_020085105.1) - Mandarin fish N/A
• Cyprinus carpio (GCA_905221575.1) - Common carp N/A
• Sebastes schlegelii (GCA_014673565.1) - Schlegel's black rockfish N/A
• Ictalurus furcatus (GCA_023375685.2) - Blue catfish N/A
• Misgurnus anguillicaudatus - Pond loach (GCF_027580225.2) N/A
• Myotis yumanensis (GCF_028538775.1) - Yuma myotis N/A
• Paralichthys olivaceus (GCA_024713975.2) - Japanese flounder N/A
• Camelus dromedarius (GCF_036321535.1) - Arabian camel N/A